Role of stacking interactions in the binding sequence preferences of DNA bis-intercalators: insight from thermodynamic integration free energy simulations

By Marco Esther   Negri Ana   Luque F. Javier   Gago Federico  

Nucleic Acids Research, Vol. 33, Iss. 19, 2005-01 ,pp. : 6214-6224

Oxford University Press

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Molecular dynamics of a B DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation

By Mura Cameron   McCammon J. Andrew  

Nucleic Acids Research, Vol. 36, Iss. 15, 2008-09 ,pp. : 4941-4955

Oxford University Press

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Effects of the substitution positions of Br group in intercalative ligand on the DNA-binding behaviors of Ru(II) polypyridyl complexes

By Xu H.   Zheng K.-C.   Lin L.-J.   Li H.   Gao Y.   Ji L.-N.  

Journal of Inorganic Biochemistry, Vol. 98, Iss. 1, 2004-01 ,pp. : 87-97

Elsevier

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2‐Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal‐ion and base sequence effects

By Stivers James T.  

Nucleic Acids Research, Vol. 26, Iss. 16, 1998-08 ,pp. : 3837-3844

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DNA-stacking interactions Determine the Sequence Specificity of the Deoxyribonuclease Activity of 1,10-Phenanthroline-copper Ion

By Schaeffer F.   Rimsky S.   Spassky A.  

Journal of Molecular Biology, Vol. 260, Iss. 4, 1996-07 ,pp. : 523-539

Academic Press

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