Mycorrhizal Mediation of Soil :Fertility, Structure, and Carbon Storage

Publication subTitle :Fertility, Structure, and Carbon Storage

Author: Johnson   Nancy Collins;Gehring   Catherine;Jansa   Jan  

Publisher: Elsevier Science‎

Publication year: 2016

E-ISBN: 9780128043837

P-ISBN(Paperback): 9780128043127

Subject: P57 mineralogy;S15 pedology

Keyword: 环境科学、安全科学,生态学(生物生态学),普通生物学,植物学,一般性理论

Language: ENG

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Description

Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage offers a better understanding of mycorrhizal mediation that will help inform earth system models and subsequently improve the accuracy of global carbon model predictions. Mycorrhizas transport tremendous quantities of plant-derived carbon below ground and are increasingly recognized for their importance in the creation, structure, and function of soils. Different global carbon models vary widely in their predictions of the dynamics of the terrestrial carbon pool, ranging from a large sink to a large source.

This edited book presents a unique synthesis of the influence of environmental change on mycorrhizas across a wide range of ecosystems, as well as a clear examination of new discoveries and challenges for the future, to inform land management practices that preserve or increase below ground carbon storage.

  • Synthesizes the abundance of research on the influence of environmental change on mycorrhizas across a wide range of ecosystems from a variety of leading international researchers
  • Focuses on the specific role of mycorrhizal fungi in soil processes, with an emphasis on soil development and carbon storage, including coverage of cutting-edge methods and perspectives
  • Includes a chapter in each section on future avenues for further study

Chapter

2.3 EVOLUTIONARY ORIGINS OF PLANTS AND MYCORRHIZAS

2.4 COEVOLUTION OF PLANTS, MYCORRHIZAS, AND PHOTOSYNTHATE-DRIVEN WEATHERING AND PEDOGENESIS

2.5 FEEDBACK BETWEEN PLANT-DRIVEN PEDOGENESIS, GLOBAL BIOGEOCHEMICAL CYCLES, AND THE EVOLUTION OF PLANTS AND MYCORRHIZAL FUNCTIONING

2.6 CONCLUSIONS

Acknowledgments

References

3 - Role of Mycorrhizal Symbiosis in Mineral Weathering and Nutrient Mining from Soil Parent Material

3.1 INTRODUCTION

3.2 MECHANISMS OF MINERAL WEATHERING

3.3 FUNGAL WEATHERING IN THE LABORATORY

3.4 FROM LABORATORY TO FIELD

3.4.1 Historical Weathering Markers

3.4.2 Isotope Tracers

3.4.3 Mineral Incubations

3.4.4 Modeling

3.5 CONCLUSIONS AND FUTURE RESEARCH DIRECTIONS

References

4 - Mycorrhizal Interactions With Climate, Soil Parent Material, and Topography

4.1 INTRODUCTION

4.2 MYCORRHIZAL INTERACTIONS WITH CLIMATE

4.2.1 Environmental Predictors of Mycorrhizas

4.2.2 Distribution of Soil Orders and Mycorrhizas Corresponds to Climate

4.2.3 Climatic and Mycorrhizal Mediation of Decomposition

4.3 MYCORRHIZAL INTERACTIONS WITH PARENT MATERIAL

4.3.1 Soil Phosphorus Dynamics

4.3.2 Physicochemical Properties of Soil Parent Material

4.3.3 Mycorrhizas as a Weathering Agent

4.4 MYCORRHIZAL INTERACTIONS WITH TOPOGRAPHY

4.4.1 Topography Influences on Physical Conditions and Processes

4.4.2 Topography Influences Disturbance Regimes

4.4.3 Mycorrhizas Mediate Geomorphology

4.5 CONCLUSIONS

References

5 - Mycorrhizas Across Successional Gradients

5.1 SUCCESSION

5.2 SUCCESSION IN MYCORRHIZAL FUNGAL COMMUNITIES

5.3 HABITAT DRIVERS

5.3.1 The Changing Soil Abiotic Environment during Primary Succession

5.3.2 The Changing Soil Abiotic Environment during Secondary Succession

5.3.2.1 Key Soil Abiotic Factors that Regulate Mycorrhizal Community Composition

5.3.2.1.1 SOIL NUTRIENTS: NITROGEN AND PHOSPHORUS

5.3.2.1.2 MOISTURE

5.3.2.1.3 PH

5.4 PLANT DRIVERS

5.4.1 Plant Community Assembly

5.4.2 Do Changing Plant Communities Drive Fungal Communities?

5.4.3 Plant Host Specificity As a Driver of Changes in Fungal Communities

5.4.3.1 Host-Specific Ectomycorrhizal Fungal Species: A Paradox?

5.5 FUNGAL DRIVERS

5.5.1 Fungal Community Assembly

5.5.1.1 Dispersal Limitations

5.5.1.2 Rapid Root Colonization, Fungal Competition, and Priority Effects

5.6 INTERACTING DRIVERS

5.6.1 Toward a General Model of Mycorrhizal Fungal Succession: Integrating Drivers

5.6.1.1 Nitrogen and the Interacting Drivers Hypothesis

5.6.1.2 Interacting Drivers Hypothesis Linking Plant and Fungal Communities

5.6.1.3 Shifts in Fungal Communities Depend on Scale

5.6.1.3.1 TIME SCALE: PEDOGENESIS

5.6.1.3.2 SPATIAL SCALE: FROM ROOT TIPS TO CONTINENTAL SCALES

5.6.1.4 Advancing Mycorrhizal Community Ecology with Well-Suited Approaches and Tools

5.6.2 Outstanding Questions and Conclusions

References

II - MYCORRHIZAL MEDIATION OF SOIL FERTILITY

6 - Introduction: Perspectives on Mycorrhizas and Soil Fertility

6.1 INTRODUCTION

6.2 CONTRIBUTIONS OF MYCORRHIZAL FUNGI TO SOIL FERTILITY

6.2.1 Contributions of Mycorrhizal Fungi to Soil Biological Fertility

6.2.2 Contributions of Mycorrhizal Fungi to Soil Chemical Fertility

6.2.3 Contributions of Mycorrhizal Fungi to Soil Physical Fertility

6.3 SOIL FERTILITY INFLUENCES MYCORRHIZAL FUNGI

6.3.1 Mycorrhizal Function in Agricultural Ecosystems

6.3.2 Mycorrhizal Function in Forest Ecosystems

6.4 PRINCIPLES FOR MANAGEMENT OF MYCORRHIZAL FUNGI FOR SOIL FERTILITY

6.5 LOOKING FORWARD

References

7 - Fungal and Plant Tools for the Uptake of Nutrients in Arbuscular Mycorrhizas: A Molecular View

7.1 INTRODUCTION

7.2 NITROGEN NUTRITION WITHIN ARBUSCULAR MYCORRHIZAS

7.3 PHOSPHATE TRANSPORT IN ARBUSCULAR MYCORRHIZAL SYMBIOSIS

7.4 SULFUR METABOLISM AND ARBUSCULAR MYCORRHIZAL SYMBIOSIS

7.5 FROM ROOT TO SHOOT AND BACK: EVIDENCE FOR A SYSTEMIC SIGNALING AND GENE REGULATION IN MYCORRHIZAL PLANTS

7.6 PERSPECTIVES AND CONCLUSIONS

Acknowledgments

References

8 - Accessibility of Inorganic and Organic Nutrients for Mycorrhizas

8.1 INTRODUCTION

8.1.1 Nitrogen Availability

8.1.2 Phosphorus Availability

8.2 MOVEMENT OF PHOSPHATE AND NITRATE IONS TO ROOTS

8.3 INORGANIC PHOSPHORUS AND NITROGEN ACQUISITION BY ARBUSCULAR MYCORRHIZAL FUNGI

8.4 INORGANIC PHOSPHORUS AND NITROGEN ACQUISITION BY ECTOMYCORRHIZAL FUNGI

8.5 ARBUSCULAR MYCORRHIZAL FUNGI AND ORGANIC NUTRIENT FORMS

8.6 ECTOMYCORRHIZAL FUNGI AND ORGANIC NUTRIENT FORMS

8.6.1 Evidence From Genome Analysis

8.6.2 Evidence From Field and Microcosm Studies

8.6.3 Ectomycorrhizal Fungi and Organic Phosphorus Sources

8.7 CONCLUSIONS

Acknowledgments

References

9 - Mycorrhizas as Nutrient and Energy Pumps of Soil Food Webs: Multitrophic Interactions and Feedbacks

9.1 INTRODUCTION

9.1.1 Mycorrhizas and Net Primary Productivity

9.1.2 Mycorrhizas and Plant–Soil Feedback

9.2 MYCORRHIZAS AND SAPROTROPHS

9.3 MYCORRHIZAS AND HERBIVORES

9.4 MYCORRHIZAS AND FUNGIVORES

9.5 MYCORRHIZAS AND BACTERIVORES

9.6 MYCORRHIZAS AND HIGHER TROPHIC LEVELS

9.7 THE WAY FORWARD

Acknowledgments

References

10 - Implications of Past, Current, and Future Agricultural Practices for Mycorrhiza-Mediated Nutrient Flux

10.1 INTRODUCTION

10.2 AGRICULTURE IN THE PAST

10.3 MODERN AGRICULTURE

10.3.1 Soil Tillage

10.3.2 Cultural Systems

10.3.3 Changes in Soils and Plants

10.4 AGRICULTURE IN THE FUTURE

10.4.1 Inoculants

10.4.2 Bioactive Molecules

10.5 CONCLUSION

References

11 - Integrating Ectomycorrhizas Into Sustainable Management of Temperate Forests

11.1 INTRODUCTION

11.2 HARVESTING SYSTEMS

11.2.1 Rotation Age: Frequency of Harvesting

11.2.2 Large Openings: Clearcuts

11.2.3 Aggregated Retention

11.2.4 Dispersed Green-Tree Retention

11.2.5 Refuge Plants

11.2.6 Importance of Mycorrhizal Networks

11.2.7 Coarse Woody Debris

11.2.8 Compaction

11.3 STAND REESTABLISHMENT

11.3.1 Is a Change in Ectomycorrhizal Fungal Community Immediately After Commercial Harvesting Likely to Affect Forest Resilience?

11.3.2 Timing of Planting

11.3.3 Site Preparation and Broadcast Burning

11.3.4 Herbicide or Heat Treatment

11.4 SEEDLING PRODUCTION

11.4.1 Inoculation: Is Worth it?

11.4.2 Assisted Migration: Seed Sources

11.4.3 Planting of Single-Species Versus Mixed Stands

11.5 STAND MANAGEMENT

11.5.1 Thinning

11.5.2 Brushing

11.5.3 Prescribed Burning

11.5.4 Fertilization

11.6 CONCLUSIONS

Acknowledgment

References

12 - Mycorrhizal Mediation of Soil Fertility Amidst Nitrogen Eutrophication and Climate Change

12.1 INTRODUCTION

12.2 MECHANISMS OF MYCORRHIZAL NUTRITION AND STOICHIOMETRY

12.3 NUTRIENT UPTAKE AND MYCORRHIZAL FUNGI: THE BASICS

12.3.1 Plant Uptake Model

12.3.2 Soil Availability Model

12.3.3 Nutrient Forms and Availability

12.3.3.1 Throughput

12.3.3.2 Mineralization

12.3.3.3 Weathering

12.3.4 Temporal Dynamics

12.4 MYCORRHIZAS AND GLOBAL CHANGE

12.4.1 Impacts of Increasing Carbon Dioxide

12.4.2 Temperature and Soil Moisture

12.5 MYCORRHIZAS AND NITROGEN DEPOSITION

12.6 WHAT IS NEEDED? A STOICHIOMETRIC CHALLENGE

Acknowledgments

References

III - MYCORRHIZAL MEDIATION OF SOIL STRUCTURE ANDSOIL-PLANT WATER RELATIONS

13 - Introduction: Mycorrhizas and Soil Structure, Moisture, and Salinity

13.1 INTRODUCTION

13.2 SOIL STRUCTURE

13.3 SOIL SALINITY

13.4 SOIL MOISTURE

References

14 - Mycorrhizas and Soil Aggregation

14.1 INTRODUCTION: SOIL AGGREGATION, ITS COMPONENT PROCESSES, AND SIGNIFICANCE OF SOIL STRUCTURE

14.2 EVIDENCE FOR INVOLVEMENT OF DIFFERENT TYPES OF MYCORRHIZAS IN SOIL AGGREGATION

14.2.1 Arbuscular Mycorrhizal Fungi

14.2.2 Ectomycorrhizal Fungi

14.2.3 Other Mycorrhizal Types

14.3 MECHANISMS OF SOIL AGGREGATION

14.3.1 Biophysical Mechanisms

14.3.2 Biochemical Mechanisms

14.3.3 Biological Interaction Mechanisms

14.4 RELATIVE IMPORTANCE OF MYCORRHIZAS

14.4.1 In Relation to Other Biota

14.4.2 Across Different Settings

14.5 AVENUES AND NEEDS FOR FUTURE RESEARCH

14.5.1 Mechanisms

14.5.2 Relative Importance and Greater Coverage of Ecosystem Types

14.5.3 Conceptual Advances: Functions and Ecosystem Engineering

14.5.4 Model Integration

References

15 - Arbuscular Mycorrhizal Fungi and Soil Salinity

15.1 INTRODUCTION

15.2 ARBUSCULAR MYCORRHIZAL FUNGI AND SALT STRESS

15.3 SALINITY IN COMBINATION WITH DROUGHT AND WARMING

15.4 STUDIES OF SALINITY RESPONSES OF INDIGENOUS ARBUSCULAR MYCORRHIZAL FUNGI

15.5 PLANT ROOT PROPERTIES, MYCORRHIZAL FUNGI AND SALINITY STRESS

15.6 SIGNALING, MYCORRHIZAL FUNGI, AND SALINITY STRESS

15.7 TRIPARTITE INTERACTIONS AND SALINITY STRESS

15.8 AGRONOMICAL CONSEQUENCES OF USING MYCORRHIZAL FUNGI IN SALINE FIELDS

15.9 CONCLUSIONS AND FUTURE PERSPECTIVES

References

16 - Mycorrhizas, Drought, and Host-Plant Mortality

16.1 INTRODUCTION

16.2 MYCORRHIZAS, PLANTS, AND DROUGHT

16.2.1 Effects of Drought on Mycorrhizas

16.2.2 Mycorrhizas and Host-Plant Drought Tolerance

16.2.3 Conclusions and Suggested Directions for Future Research

16.3 DROUGHT-RELATED HOST MORTALITY AND CONSEQUENCES FOR MYCORRHIZAS

16.3.1 Pinyon Pine Mortality and Mycorrhizas

16.3.2 Implications for Other Ecosystems

Acknowledgments

References

17 - Soil Water Retention and Availability as Influenced by Mycorrhizal Symbiosis: Consequences for Individual Plants, Communities, and Ecosystems

17.1 INTRODUCTION

17.2 INFLUENCE OF VEGETATION ON SOIL HYDRAULIC PROPERTIES

17.3 MYCORRHIZAL FUNGAL INFLUENCE ON SOIL HYDRAULIC PROPERTIES: REVIEW OF PUBLISHED EVIDENCE

17.3.1 Arbuscular Mycorrhizal Fungi

17.3.2 Ectomycorrhizal Fungi

17.3.3 Long-Term Field Studies

17.4 MYCORRHIZAL FUNGAL ROLE IN HYDRAULIC REDISTRIBUTION AND HYDRAULIC CONNECTIVITY IN THE VADOSE ZONE

17.5 MYCORRHIZAL FUNGAL ROLE IN REDUCING SOIL EROSION

17.6 CONSEQUENCES FOR INDIVIDUAL PLANTS, COMMUNITIES, AND ECOSYSTEMS, AND IMPLICATIONS FOR TERRESTRIAL ECOSYSTEMS RESPONSE TO GLOBAL CHANGE

17.7 KNOWLEDGE GAPS, RESEARCH NEEDS, AND FUTURE RESEARCH DIRECTIONS

References

18 - Mycorrhizal Networks and Forest Resilience to Drought

18.1 INTRODUCTION

18.2 FOREST RESILIENCE

18.3 THE ROLE OF MYCORRHIZAS IN WATER UPTAKE

18.4 MYCORRHIZAL NETWORKS AND THEIR ROLE IN HYDRAULIC REDISTRIBUTION AND DROUGHT RESPONSES

18.5 ROOTING DEPTH

18.6 THE ROLE OF DROUGHT IN GLOBAL FOREST DECLINE

18.7 CLIMATE CHANGE PROJECTIONS FOR DROUGHT EFFECTS ON FORESTS AND THE DOMINO EFFECT

18.8 INCORPORATING MYCORRHIZAL NETWORKS IN FOREST MANAGEMENT

18.9 KNOWLEDGE GAPS AND FUTURE RESEARCH DIRECTIONS

18.10 CONCLUSIONS

References

IV - MYCORRHIZAL MEDIATION OF ECOSYSTEM CARBON FLUXES AND SOIL CARBON STORAGE

19 - Introduction: Mycorrhizas and the Carbon Cycle

19.1 THE CARBON CYCLE

19.2 THE KEY ROLE OF THE SOM IN SOIL PROCESSES

19.3 POSITION OF MYCORRHIZAL FUNGI WITHIN THE SOIL FOOD WEBS

19.4 MYCORRHIZAL SYMBIOSIS AND THE SOIL C CYCLING

19.5 FUNCTIONAL DIVERSITY IN MYCORRHIZAL SYMBIOSES WITH RESPECT TO C CYCLING

19.5.1 Arbuscular Mycorrhiza

19.5.2 Ectomycorrhiza

19.5.3 Ericoid Mycorrhiza

19.5.4 Orchid Mycorrhiza

19.6 OPEN QUESTIONS, EXPERIMENTAL CHALLENGES

Acknowledgment

References

20 - Carbon and Energy Sources of Mycorrhizal Fungi: Obligate Symbionts or Latent Saprotrophs?

20.1 INTRODUCTION

20.2 TWO CONCEPTS OF SAPROTROPHY

20.3 PHYLOGENETIC EVIDENCE

20.4 ENZYMATIC EVIDENCE

20.5 CARBON SIGNATURES

20.6 ECTOMYCORRHIZAL FUNGI INVOLVED

20.7 NONENZYMATIC NUTRIENT MINING BY ECTOMYCORRHIZAL FUNGI

20.8 STOICHIOMETRIC CONSIDERATIONS

20.9 MODELING STUDIES

20.10 ARBUSCULAR MYCORRHIZAL FUNGI

20.11 SAPROTROPHIC CAPABILITIES OF ECTOMYCORRHIZAL FUNGI: THE WAY FORWARD

Acknowledgments

References

21 - Magnitude, Dynamics, and Control of the Carbon Flow to Mycorrhizas

21.1 INTRODUCTION

21.2 HOW DOES THE PHYSIOLOGY AND MAGNITUDE OF PLANT-TO-FUNGUS C FLOW DEPEND ON MYCORRHIZAL FUNCTIONAL GROUP?

21.2.1 Mycorrhizal Functional Groups

21.2.2 Arbuscular Mycorrhizas

21.2.3 Orchid Mycorrhizas and Life-Cycle–Dependent C Flux

21.2.4 Other Endomycorrhizas

21.2.5 Ectomycorrhizas

21.3 HOW DOES C AVAILABILITY (CO2 AND SHADING) INFLUENCE THE CARBON FLUX BETWEEN PLANT AND MYCORRHIZAL FUNGAL COMMUNITIES?

21.3.1 Abiotic Influences on C Flux Between Plants and Mycorrhizal Fungi

21.3.2 Temporal Dynamics in C Allocation

21.3.3 Community Diversity

21.4 TO WHAT EXTENT IS THE CARBON FLOW BETWEEN PLANT AND SYMBIOTIC FUNGAL PARTNERS REGULATED BY RECIPROCAL NUTRIENT EXCHANGE?

21.4.1 Evolutionary History of Plant-to-Fungal C Flow

21.4.2 Why Does C Flow Between Plants and Fungi Need to Be Regulated?

21.4.3 C-for-Nutrient Exchange: Initial Evidence Through to Current Hypotheses

21.5 CONCLUSIONS

Acknowledgments

References

22 - Trading Carbon Between Arbuscular Mycorrhizal Fungi and Their Hyphae-Associated Microbes

22.1 MYCORRHIZAS AND HYPHAE-ASSOCIATED MICROBES

22.2 CARBON ALLOCATION FROM MYCORRHIZAL FUNGI TO THE HYPHAE-ASSOCIATED MICROBES IN THE HYPHOSPHERE

22.3 INVOLVEMENT OF THE HYPHAE-ASSOCIATED MICROBES IN NUTRIENT CYCLING AND CARBON TRANSFORMATION IN THE HYPHOSPHERE

22.3.1 Mycorrhiza Helper Bacteria

22.3.2 Endocellular Bacteria

22.3.3 Nutrient Uptake

22.3.3.1 Phosphorus

22.3.3.2 Other Nutrients

22.3.4 Induced Protection of Plants Against Pathogens

22.3.5 Other Hyphae-Associated Microbial Benefits

22.4 DYNAMICS OF THE MYCORRHIZOSPHERE ASSOCIATIONS UNDER FLUCTUATING ENVIRONMENTAL CONDITIONS

22.5 UNRESOLVED QUESTIONS ON TRADING CARBON AND NUTRIENT BETWEEN MYCORRHIZAS AND HYPHAE-ASSOCIATED MICROBES

References

23 - Immobilization of Carbon in Mycorrhizal Mycelial Biomass and Secretions

23.1 INTRODUCTION

23.2 MYCELIAL BIOMASS PRODUCTION AND TURNOVER

23.2.1 Arbuscular Mycorrhizal Fungi

23.2.2 Ectomycorrhizal Fungi

23.2.3 Ericoid Mycorrhizal Fungi

23.2.4 Biomass Turnover

23.2.5 Biomass Recycling and Decomposition by Mycorrhizal Fungi

23.3 SECRETIONS OF MYCORRHIZAL MYCELIA

23.4 NECROMASS PROPERTIES AND DECOMPOSITION

23.4.1 Mycorrhizal Fungal Necromass Decomposition

23.4.2 Effects of Mycorrhizal Tissue Quality

23.5 INCORPORATION INTO STABLE CARBON

23.5.1 Sequestration of Carbon Into Secondary Minerals

23.5.2 Sequestration of Carbon Into Soil Organic Matter

23.6 CONCLUSIONS

Acknowledgments

References

24 - Mycorrhizal Interactions With Saprotrophs and Impact on Soil Carbon Storage

24.1 INTRODUCTION

24.1.1 How Different Are Roots and Mycorrhizal Fungi in Relation to Saprotrophs?

24.1.2 Mycorrhizal Effects on Soil Organic Matter

24.2 MYCORRHIZAL FUNGI AS A SOURCE OF C IN SOIL

24.2.1 Provision of Labile C to Microbial Saprotrophs

24.2.2 Importance in Different Mycorrhizal Fungi and Effect on Soil Organic Carbon

24.3 COMPETITION FOR NUTRIENTS AND HABITAT

24.3.1 Organic Nutrient Uptake

24.4 INTERACTIONS AMONG MYCORRHIZAL FUNGI, SOIL FAUNA, AND SOIL ORGANIC CARBON

24.5 CONCLUSION

Acknowledgments

References

25 - Biochar—Arbuscular Mycorrhiza Interaction in Temperate Soils

25.1 INTRODUCTION

25.2 BIOCHAR AND MYCORRHIZAS

25.3 BIOCHAR INFLUENCES MYCORRHIZAL COLONIZATION VIA ITS EFFECTS ON SOIL PROPERTIES

25.3.1 Soil pH

25.3.2 P Availability

25.3.3 N Availability

25.3.4 Soil Temperature

25.3.5 Mycorrhizal Fungal Refugia

25.3.6 Organic Inhibitors and Signals

25.4 BIOCHAR INFLUENCES PLANT RESPONSE TO MYCORRHIZAL COLONIZATION VIA ITS IMPACT ON THE LEVEL OF PLANT STRESS

25.4.1 Biochar Decreases Nutrient Stress in Plants

25.4.2 Biochar Reduces Disease Severity in Plants

25.5 CONCLUSIONS

Acknowledgments

References

26 - Integrating Mycorrhizas Into Global Scale Models: A Journey Toward Relevance in the Earth’s Climate System

26.1 INTRODUCTION

26.2 EXISTING MODEL FRAMEWORKS

26.3 CRITICAL MYCORRHIZAL FUNCTIONS FOR TERRESTRIAL BIOSPHERE MODELS

26.4 MYCORRHIZAL FUNGI AS TRAIT INTEGRATORS

26.5 CHALLENGES MOVING FORWARD

26.6 CONCLUSION

References

Index

A

B

C

D

E

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I

J

L

M

N

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P

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