Phylogeny, Molecular Population Genetics, Evolutionary Biology and Conservation of the Neotropical Primates ( Animal Science, Issues and Research )

Publication series :Animal Science, Issues and Research

Author: Manuel Ruiz-Garcia;Joseph Mark Shostell  

Publisher: Nova Science Publishers, Inc.‎

Publication year: 2016

E-ISBN: 9781634852043

P-ISBN(Paperback): 9781634851657

Subject: Q959.848 Primates

Keyword: 动物学

Language: ENG

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Phylogeny, Molecular Population Genetics, Evolutionary Biology and Conservation of the Neotropical Primates

Chapter

Chapter 2: THE PALEOBIOLOGY OF THE RECENTLY-EXTINCT PLATYRRHINES OF BRAZIL AND THE CARIBBEAN

ABSTRACT

INTRODUCTION

The “Giant” Subfossils of Brazil

The Endemic Caribbean Primates

LOCOMOTOR AND POSTCRANIAL ADAPTATIONS

The Brazilian Primates

The Caribbean Primates

CRANIODENTAL MORPHOLOGY AND DIET

The Brazilian Primates

The Caribbean Primates

BODY SIZE

EXTINCTION

The Caribbean

Brazil

CONCLUSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 3: GENETIC HETEROGENEITY AND EVOLUTIONARY DEMOGRAPHIC HISTORY OF THE ENDEMIC COLOMBIAN SAGUINUS LEUCOPUS (PRIMATES) BY MEANS OF DNA MICROSATELLITES AND COALESCENCE METHODS

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Molecular Analyses

Population Genetics Analyses

RESULTS

Microsatellite Mutation Models

Effective Number Sizes

Gene Drift and Gene Flow in Populations of S. leucopus

Population Expansions in S. leucopus

When Did the Antioquia and Tolima S. leucopus Populations Diverge?

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 4: DIVERSITY OF CEBUS SPECIES FROM THE SOUTHERN DISTRIBUTION OF THE GENUS

ABSTRACT

INTRODUCTION

THE SOUTHERNMOST CEBUS SPECIES

PHENOTYPIC AND GENETIC VARIABILITY

RESULTS AND DISCUSSION

AN INTEGRATIVE ANALYSIS OF CEBUS CAY AND C. NIGRITUS DIVERSITY

ACKNOWLEDGMENTS

REFERENCES

Chapter 5: GENETIC STRUCTURE, SPATIAL PATTERNS AND HISTORICAL DEMOGRAPHIC EVOLUTION OF WHITE-THROATED CAPUCHIN (CEBUS CAPUCINUS, CEBIDAE, PRIMATES) POPULATIONS OF COLOMBIA AND CENTRAL AMERICA BY MEANS OF DNA MICROSATELLITES

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Molecular Procedures

Population Genetics Molecular Analyses

Genetic Diversity and Natural Selection

Hardy-Weinberg Equilibrium, Genetic Heterogeneity and Gene Flow

Assignation and Genetic Structure Tests

Possible Historical Demographic Changes

Spatial Genetic Analyses

RESULTS

Gene Diversity and Natural Selection

Hardy-Weinberg Equilibrium, Genetic Heterogeneity and Gene Flow

Genetic Assignment and Genetic Structure

Historical Demographic Changes

Spatial Genetic Structure

DISCUSSION

Population Genetics of C. Capucinus

Molecular Systematics within C. Capucinus

ACKNOWLEDGMENTS

REFERENCES

Chapter 6: INVALIDATION OF THREE ROBUST CAPUCHIN SPECIES (CEBUS LIBIDINOSUS PALLIDUS, C.MACROCEPHALUS AND C. FATUELLUS; CEBIDAE, PRIMATES) IN THE WESTERN AMAZON AND ORINOCO BY ANALYZING DNA MICRO SATELLITES

ABSTRACT

INTRODUCTION

MATERIALS AND METHODS

Molecular Procedures

Population Genetics Molecular Analyses

Genetic Diversity and Natural Selection

Hardy-Weinberg Equilibrium, Genetic Heterogeneity and Gene Flow

Assignation and Genetic Structure Tests

Possible Historical Demographic Changes

Spatial Genetic Analyses

RESULTS

Gene Diversity and Natural Selection

Hardy-Weinberg Equilibrium, Genetic Heterogeneity and Gene Flow

Genetic Assignment and Genetic Structure

Historical Demographic Changes

Spatial Genetic Structure

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 7: IT IS MISLEADING TO USE SAPAJUS (ROBUST CAPUCHINS) AS A GENUS? A REVIEW OF THE EVOLUTION OF THE CAPUCHINS AND SUGGESTIONS ON THEIR SYSTEMATICS

ABSTRACT

INTRODUCTION

MATERIALS AND METHODS

Molecular Procedures

Data Analyses

RESULTS

DISCUSSION

Why the Cebus Genus Should Not Substituted by the Sapajus Genus for the Robust Capuchins

The Evolution of the Cebus Genus

The Evolution of the Gracile Capuchins: They Began the History of the Current Capuchins

The Necessity of a New Systematics for the Cebus Genus

ACKNOWLEDGMENTS

REFERENCES

Chapter 8: SEX CHROMOSOMES AND SEX DETERMINATION IN PLATYRRHINI

ABSTRACT

SEX DETERMINATION

SEX DETERMINING MECHANISMS

SEX CHROMOSOMES IN PRIMATES

PLATYRRHINI SEX CHROMOSOMES

GENES INVOLVED IN SEX DETERMINATION IN PRIMATES

REFERENCES

Chapter 9: CAN MITOCHONDRIAL DNA, NUCLEAR MICROSATELLITE DNA AND CRANIAL MORPHOMETRICS ACCURATELY DISCRIMINATE DIFFERENT AOTUS SPECIES (CEBIDAE)? SOME INSIGHTS ON POPULATION GENETICS PARAMETERS AND THE PHYLOGENY OF THE NIGHT MONKEYS

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Morphological Samples and Procedures

Molecular and Sample Procedures

Mitochondrial Sequences

Microsatellite Markers

Mitochondrial Phylogenetics Procedures

Microsatellite Statistical Analyses

RESULTS

Morphological Results

Mitochondrial Analyses

Microsatellite Analyses

DISCUSSION

Morphometrics, Molecular Population Genetics and Discrimination of Aotus Taxa

Phylogenetics and Systematics of Aotus

ACKNOWLEDGMENTS

REFERENCES

Chapter 10: PHYLOGENETIC RELATIONSHIPS OF PITHECIDAE AND TEMPORAL SPLITS IN REFERENCE TO CEBIDAE AND ATELIDAE BY MEANS OF MITOGENOMICS

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Molecular Procedures

Phylogenetics Procedures

RESULTS

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 11: MICROSATELLITE DNA ANALYSES OF FOUR ALOUATTA SPECIES (ATELIDAE, PRIMATES): EVOLUTIONARY MICROSATELLITE DYNAMICS

ABSTRACT

INTRODUCTION

MATERIALS AND METHODS

Samples and Molecular Procedures

Population Genetics Analyses

Microsatellite Central Moments

RESULTS

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 12: WHICH HOWLER MONKEY (ALOUATTA, ATELIDAE, PRIMATES) TAXON IS LIVING IN THE PERUVIAN MADRE DE DIOS RIVER BASIN (SOUTHERN PERU)? RESULTS FROM MITOCHONDRIAL GENE ANALYSES AND SOME INSIGHTS IN THE PHYLOGENY OF ALOUATTA

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Molecular Procedures

Data Analysis

Molecular Population Analyses

Phylogenetic Analyses

RESULTS

Molecular Population Genetics

Phylogenetic Inferences

DISCUSSION

How Many Taxa of Red Howler Monkeys are in Peru?

Molecular Phylogenetic Insights into the Systematics of Alouatta

ACKNOWLEDGMENTS

REFERENCES

Chapter 13: HISTORICAL GENETIC DEMOGRAPHY AND SOME INSIGHTS INTO THE SYSTEMATICS OF ATELES (ATELIDAE, PRIMATES) BY MEANS OF DIVERSE MITOCHONDRIAL GENES

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Molecular Procedures

Data Analysis

Molecular Population Analyses

Phylogenetic Analyses

RESULTS

Gene Diversity and Historical Demographic Evolutionin Ateles Taxa

Molecular Phylogenetic Inferences

DISCUSSION

Current IUCN Classifications and the Evolutionary Demographics of Ateles

New Insights on the Systematics of Ateles

ACKNOWLEDGMENTS

REFERENCES

CONSERVATION BIOLOGY

Chapter 14: CAPUCHIN MONKEYS IN AMAZONIAN MANGROVE AREAS

ABSTRACT

INTRODUCTION

METHODS

Study Area

Survey

RESULTS

Mangrove Use by Capuchin Monkeys

Localities in Mangrove Suggested for Shelter Residents Groupsof Sapajus apella

Mangrove Areas with Resident Groups

Sapajus apella

Sapajus libidinosus

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 15: HOW DOES THE COLOMBIAN SQUIRREL MONKEY COPE WITH HABITAT FRAGMENTATION? STRATEGIES TO SURVIVE IN SMALL FRAGME NTS

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

STUDY SITES DESCRIPTION

Tinigua National Park: Continuous Area

San Martin Area: Fragmented Area

PRIMATE DATA COLLECTION

Tinigua National Park: Continuous Area

San Martin Area: Fragmented Area

Data Analysis

RESULTS

Diet

Home Range and Daily Distance

Activity Budget

Group Size and Composition

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 16: CALLICEBUS ORNATUS, AN ENDEMIC COLOMBIAN SPECIES: DEMOGRAPHY, BEHAVIOR AND CONSERVATION

ABSTRACT

INTRODUCTION

MATERIALS AND METHODS

Study Area

Primate Surveys

Data Analysis

Vegetation Analysis

RESULTS

Forest Fragment Edge Versus Interior Use by Groups of Callicebus ornatus

Fragment Size Effects on Group Size and Density Index

Diversity of Hectare Plots

Additional Observations

DISCUSSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 17: BIOGEOGRAPHY AND CONSERVATION OF THE PITHECIINES: SAKIS, BEARDED SAKIS AND UACARIS (PITHECIA, CHIROPOTES AND CACAJAO)

ABSTRACT

1. INTRODUCTION

1. The Pitheciinae – Overview

2. RECENT TAXONOMIC REVISIONS

a. Chiropotes

b. Pithecia

c. Cacajao

3. GEOGRAPHIC DISTRIBUTIONS

a. River Basins and Elevation

b. Precipitation and Temperature

c. Forest Canopy Height and Net Primary Productivity

4. PITHECIINE DEMOGRAPHY

5. PITHECIINE ECOLOGY

a. Food Choice

b. Seasonality in Resource Use

c. Ecological Effects of Sympatry among Pitheciines

PITHECIINE CONSERVATION ISSUES

a. Forest Loss and Fragmentation

b. Hunting, Climate Change, and Disease

CONCLUSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 18: STATE OF PRIMATES IN NORTHEASTERN PERU: THE CASE OF THE PACAYA-SAMIRIA NATIONAL RESERVE

ABSTRACT

INTRODUCTION

MATERIAL AND METHODS

Sites Used for Monitoring of Primates in the Samiria River

Major Habitat Types and Flood Levels

METHODOLOGY USED

Terrestrial Transects

RESULTS

Population Density of Primates

Population Trends of Primates in the Samiria River

Density and Population Trends by Species

Saguinus Illigeri

Saimiri Boliviensis

Pithecia Isabella

Sapajus Macrocephalus

Cebus Yuracus

Alouatta Seniculus

Lagothrix Lagothricha Poeppigii

Interspecific (Lotka Volterra) Competition

DISCUSSION

Population Density of Primates in the Samiria River

Population Trends of Primates in the Samiria River

ACKNOWLEDGMENTS

REFERENCES

Chapter 19: CURRENT KNOWLEDGE ON PRIMATE DISTRIBUTION AND CONSERVATION IN BOLIVIA

ABSTRACT

INTRODUCTION

METHODS

RESULTS AND DISCUSSION

CALLITRICHIDAE

CEBIDAE

AOTIDAE

PITHECIIDAE

ATELIDAE

CONSERVATION OF BOLIVIAN PRIMATES

CONCLUSION

ANNEX 1. GAZETTEER OF PRIMATE DISTRIBUTION LOCALITIESIN BOLIVIA

ACKNOWLEDGMENTS

REFERENCES

ABOUT THE CONTRIBUTORS

INDEX

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