CLEAVED AMPLIFIED POLYMORPHIC SEQUENCES (CAPS) MARKERS IN PLANT BIOLOGY

CLEAVED AMPLIFIED POLYMORPHIC SEQUENCES (CAPS) MARKERS IN PLANT BIOLOGY

Library of Congress Cataloging-in-Publication Data

CONTENTS

PREFACE

Chapter 1: MINI-HISTORY OF MAP-BASED CLONING IN ARABIDOPSIS

ABSTRACT

1. INTRODUCTION

2. FUNDAMENTALS OF GENE MAPPING OF A MUTATION SITE

3. FAST ISOLATION OF RECOMBINANT (FIRE) METHOD

4. SHARING MARKER INFORMATION AND SETUP OF NARAMAPS

5. WHOLE-GENOME ANALYSIS OF CROSSOVERS USING CAPS MARKERS OF NARAMAPS

6. ADVANTAGE AND LIMITATION OF FORWARD GENETICS WITH CONVENTIONAL MAP-BASED CLONING

7. ADVANCES IN SEQUENCING TECHNOLOGY OVERCOME LIMITATIONS OF FORWARD GENETICS

CONCLUSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 2: DEVELOPMENT AND ANALYSIS OF CAPS MARKERS IN FERNS

ABSTRACT

APPLICATION OF CAPS MARKERS

EST LIBRARY CONSTRUCTION

PRIMER SET DESIGN AND DEVELOPMENT OF CAPS MARKERS FROM EST LIBRARIES

DEVELOPMENT OF MARKERS FROM GENOME SEQUENCE DATA OBTAINED BY NEXT-GENERATION SEQUENCING

CONCLUSION

REFERENCES

Chapter 3: APPLICATION OF CAPS MARKERS FOR GENOMIC STUDIES IN WILD EMMER WHEAT

ABSTRACT

INTRODUCTION

GENERAL APPROACH FOR CAPS MARKER DEVELOPMENT IN WILD EMMER WHEAT

HIGH-RESOLUTION MAPPING OF THE HIGH GRAIN PROTEIN CONTENT QTL, GPC-B1, BY CAPS MARKERS PROVIDED A SOLID BASIS FOR ITS POSITIONAL CLONING

ADVANCEMENTS IN CAPS MAPPING OF DISEASE RESISTANCE GENES DERIVED FROM WILD EMMER WHEAT

POSITIONAL CLONING OF THE SLOW-RUSTING STRIPE RUST RESISTANCE GENE, YR36, DERIVED FROM WILD EMMER WHEAT

AN IMPROVED APPROACH FOR GSP DEVELOPMENT BASED ON CHROMOSOME-SPECIFIC GENOMEZIPPER IN MAPPING OF POWDERY MILDEW RESISTANCE GENES

UTILIZATION OF 1BS PHYSICAL MAP FOR CAPS MARKER DEVELOPMENT TO TARGET STRIPE RUST RESISTANCE GENES DERIVED FROM T. DICOCCOIDES

CONCLUSION

ACKNOWLEDGMENTS

REFERENCES

Chapter 4: CAPS MARKERS IN BREEDING OF OIL CROPS

ABSTRACT

INTRODUCTION

1. SOYBEAN

2. SUNFLOWER

3. RAPESEED

4. ADVANTAGES AND DISADVANTAGES OF USING CAPS MARKERS

CONCLUSION

ACKNOWLEDGMENT

REFERENCES

Chapter 5: CAPS TECHNOLOGY AS A TOOL FOR THE DEVELOPMENT OF GENIC AND FUNCTIONAL MARKERS: STUDY IN PEAS

ABSTRACT

INTRODUCTION

A CASE STUDY: DEVELOPMENT OF FUNCTIONAL MARKERS FOR THE SELECTION OF POWDERY MILDEW RESISTANCE IN PEA

FUTURE PERSPECTIVE FOR THE USE OF CAPS TECHNOLOGY

REFERENCES

Chapter 6: APPLICATION OF CAPS MARKERS TO THE MAPPING AND MARKER-ASSISTED BREEDING OF GENES FOR RESISTANCE TO FUSARIUM WILT IN THE TOMATO

ABSTRACT

INTRODUCTION

CONCLUSION

REFERENCES

Chapter 7: DEVELOPMENT AND APPLICATIONS OF CAPS MARKERS IN TOMATO BREEDING: SUCCESSFUL STORY ABOUT THE OVATE GENE

ABSTRACT

INTRODUCTION

ITALIAN LOCAL CULTIVARS AND ‘PEAR’ SHAPE: A MATTER OF NAMES?

OUR TEST

WHICH SHAPE FOR THE BEST SAUCE?

CONCLUSION

REFERENCES

Chapter 8: DEVELOPMENT OF CAPS MARKERS AND THEIR USE IN BREEDING OF RYEGRASSES AND RELATED SPECIES

ABSTRACT

INTRODUCTION

DEVELOPMENT AND MAPPING OF CAPS MARKERS

GENETIC ANALYSIS OF AGRICULTURALLY IMPORTANT TRAITS VIA CAPS MARKERS

CONCLUSION

REFERENCES

Chapter 9: THE USE OF CAPS AND dCAPS MARKERS IN MARKER-ASSISTED SELECTION FOR TOBACCO BREEDING

ABSTRACT

1. INTRODUCTION

2. PCR-BASED DNA MARKERS

3. MAS WITH CAPS AND dCAPS IN TOBACCO BREEDING

4. FUTURE PROSPECTS OF TOBACCO BREEDING ASSISTED WITH CAPS AND dCAPS MARKERS

REFERENCES

Chapter 10: DEVELOPMENT OF CAPS MARKERS AND ITS USE FOR MALTING BARLEY BREEDING

ABSTRACT

1. INTRODUCTION

2. IMPORTANCE OF MARKER-ASSISTED SELECTION (MAS) IN MALTING BARLEY BREEDING

3. STRATEGY OF CAPS MARKER DEVELOPMENT

4. CAPS MARKERS FOR MALTING AND BREWING QUALITY TRAITS

CONCLUSION

REFERENCES

Chapter 11: BASIC AND APPLIED RESEARCH ON BOEHMERIA (RAMIE) UTILISING CAPS MARKER TECHNOLOGY

ABSTRACT

INTRODUCTION

MOLECULAR MARKERS USED IN BOEHMERIA RESEARCH

THE APPLICATION OF CAPS MARKER TECHNOLOGY TO BOEHMERIA NIVEA RESEARCH

CONCLUSION

REFERENCES

Chapter 12: VERSATILITY OF CAPS MARKERS: AGRICULTURE AND FORESTRY APPLICATIONS

ABSTRACT

INTRODUCTION

SECTION I. DNA PREPARATION FROM THE RHIZOSPHERIC ENVIRONMENT OF NATIVE FOREST TREES AND ASSESSMENT OF FUNGAL GENETIC DIVERSITY USING CAPS MARKERS

SECTION 2. GENETIC DIVERSITY OF ORGANIC MATTER TRANSFORMING ACTINOMYCETALES ESTIMATED BY CAPS MARKERS

SECTION 3. APPLICATION OF CAPS MARKERS FOR MASSIVE LEVEL CERTIFICATION OF PLANTS AND PRODUCTS IN THE TRUFFLE AGRO-INDUSTRY IN SOUTH AMERICA

REFERENCES

Chapter 13: WHY ARE THE DEVELOPMENT AND APPLICATION OF CAPS MARKERS SO DIFFERENT IN BREAD WHEAT COMPARED TO BARLEY?

ABSTRACT

INTRODUCTION

OVERVIEW OF CAPS MARKERS APPLICATION IN WHEAT

CAPS MARKERS IN BARLEY

SNPS AND THEIR FREQUENCY IN WHEAT AND BARLEY

PRACTICAL STEPS FOR CAPS MARKER DEVELOPMENT IN WHEAT AND BARLEY

CAPS MARKER SCORING IN WHEAT

EXAMPLES OF CAPS MARKER SCORING IN BARLEY

CONCLUSION

AKNOWLEDGMENTS

REFERENCES

INDEX