Non-covalent Interactions in Quantum Chemistry and Physics :Theory and Applications

Publication subTitle :Theory and Applications

Author: Roza   Alberto Otero de la;DiLabio   Gino A.  

Publisher: Elsevier Science‎

Publication year: 2017

E-ISBN: 9780128098363

P-ISBN(Paperback): 9780128098356

Subject: O641.12 quantum theory of chemical bond

Keyword: 化学原理和方法,原子物理学,物理学,化学

Language: ENG

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Description

Non-covalent Interactions in Quantum Chemistry and Physics: Theory and Applications provides an entry point for newcomers and a standard reference for researchers publishing in the area of non-covalent interactions. Written by the leading experts in this field, the book enables experienced researchers to keep up with the most recent developments, emerging methods, and relevant applications.

The book gives a comprehensive, in-depth overview of the available quantum-chemistry methods for intermolecular interactions and details the most relevant fields of application for those techniques. Theory and applications are put side-by-side, which allows the reader to gauge the strengths and weaknesses of different computational techniques.

  • Summarizes the state-of-the-art in the computational intermolecular interactions field in a comprehensive work
  • Introduces students and researchers from related fields to the topic of computational non-covalent interactions, providing a single unified source of information
  • Presents the theoretical foundations of current quantum mechanical methods alongside a collection of examples on how they can be applied to solve practical problems

Chapter

1.2 Electrostatic Interactions

1.3 Exchange Repulsion

1.4 Induction

1.4.1 Charge Transfer Energy

1.5 Dispersion

1.5.1 Many-Body Dispersion

1.6 Examples

1.6.1 Inert Gas Dimers

1.6.2 Hydrogen Bonds

1.6.3 Halogen Bonds

1.6.4 Energy Landscapes

1.7 Summary

References

2 Energy Partition Analyses: Symmetry-Adapted Perturbation Theory and Other Techniques

2.1 Introduction

2.2 The Long-Range Limit and Perturbation Theory

2.2.1 Rayleigh-Schrödinger Perturbation Theory

2.2.2 The Polarization Approximation

2.3 Symmetry Adapted PTs: Basic Formalism and Flavors

2.4 Supermolecular EDAs

2.4.1 Orbital Based Partitions

Kitaura-Morokuma EDA

Ziegler-Rauk EDA

Localized Molecular Orbital EDA

Natural EDA

Other Orbital-Based EDAs

2.4.2 Real-Space Partitions

2.5 Physical and Chemical Insight: Comparison of Energetic Terms

2.5.1 A Toy Example: The Dissociative Heitler-London Triplet of H2 Molecule

2.5.2 The Coulombic or Electrostatic Interaction

2.5.3 Exchange and Antisymmetry

2.5.4 Polarization and Charge Transfer

2.5.5 Dispersion

2.6 Overview and Conclusions

Acknowledgments

References

3 Intermolecular Interaction Energies from Kohn-Sham Random Phase Approximation Correlation Methods

3.1 Intermolecular Interactions and the Electron Correlation Problem

3.2 The Revival of the RPA as a Ground-State Electron Correlation Method

3.3 Derivation of the RPA

3.4 Beyond Direct RPA

3.4.1 RPA Methods Including Exchange Interactions

3.4.2 RPA Methods Including Additional Many-Body Contributions

3.4.3 Range-Separated RPA Methods

3.4.4 ACFDT Methods with Additional Kernel Correlation Terms

3.4.5 Particle-Particle RPA

3.4.6 Orbital Optimized RPA

3.5 Interaction Energy Benchmarks

3.5.1 S22 Benchmark

3.5.2 S66x8 Benchmark

3.5.3 IDISP Benchmark

3.6 RPA in Intermolecular Perturbation Theory

3.6.1 Molecular Properties

3.6.2 Symmetry-Adapted Perturbation Theory

3.7 s-Stacking Versus p-Stacking Interactions

3.8 Interaction Energies for Large Organic Complexes

3.8.1 S12L Benchmark Database: Introduction

3.8.2 Basis Set Extrapolation Scheme for Large Systems

3.8.3 S12L Benchmark Database: Binding Energies

3.9 Summary

List of Acronyms

Acknowledgments

References

4 Wavefunction Theory Approaches to Noncovalent Interactions

4.1 The Challenges of Modeling Noncovalent Interactions

4.1.1 The Electron Correlation Challenge

4.1.2 The Basis Set Challenge

Counterpoise Corrections

4.2 Definitive Results Using Coupled-Cluster Theory

4.2.1 The Reliability of Coupled-Cluster with Perturbative Triples, CCSD(T)

4.2.2 Basis Set Extrapolation

4.2.3 Focal-Point Analysis

4.2.4 Density Fitting, Cholesky Decomposition, and Frozen Natural Orbitals

4.2.5 Explicitly Correlated Methods

4.3 Coupled-Cluster Approaches for Larger Systems

4.3.1 Local Correlation Methods

4.3.2 The Many-Body Expansion

4.4 Evaluating Approximate Methods

4.4.1 Databases of Benchmark Interaction Energies

4.4.2 Methods Based on Møller-Plesset Perturbation Theory

Canonical MP2

Spin-Component-Scaled MP2

Dispersion-Weighted MP2

Coupled MP2

MP2.5

4.4.3 Methods Based on Coupled-Cluster Theory

Spin-Component-Scaled CCSD

Canonical CCSD(T)

Dispersion-Weighted CCSD(T)

4.4.4 Comparison to Density-Functional Theory and Symmetry-Adapted Perturbation Theory

Acknowledgments

References

5 The Exchange-Hole Dipole Moment Dispersion Model

5.1 The Perturbation Theory of Dispersion

5.1.1 The London and Salem Models

5.1.2 The Exchange-Hole Dipole Moment Model

5.1.3 Comparison of Atomic Dispersion Coefficients

5.1.4 Exact Versus Density-Functional Hole Models

5.1.5 The dDsC Exchange-Hole Model

5.2 The XDM Dispersion Energy

5.2.1 Higher-Order Dispersion Coefficients

5.2.2 Decomposition into Atomic Contributions

5.2.3 Dependence on the Chemical Environment

5.2.4 The Damping Function

5.3 The Role of the Base Functional

5.4 The Solid State: XDM for Periodic Systems

5.5 Conclusions

Acknowledgments

References

6 A Comprehensive Overview of the DFT-D3 London-Dispersion Correction

6.1 Introduction

6.2 Theoretical Background

6.2.1 The DFT-D2 Correction

6.2.2 The DFT-D3 Correction

The DFT-D3(0) Variant

The DFT-D3(BJ) Variant

The DFT-D3(CSO) Variant

The System-Dependent C6 Coefficients in DFT-D3

6.2.3 Combining DFT-D3 with Quantum-Chemical Approaches

6.2.4 Three-Body Effects in DFT-D3

6.2.5 DFT-D3 for Periodic Systems

6.3 Availability of DFT-D3

6.4 Discussion and Examples

6.4.1 On the Accuracy of DFT-D3 Dispersion Coefficients

6.4.2 Typical Noncovalent Interactions

6.4.3 Intramolecular Dispersion Effects in Thermochemistry and Kinetics

6.4.4 DFT-D3 and Geometries

6.4.5 DFT-D3 for Bulk Solids and Surfaces

6.4.6 Modified DFT-D3 Dispersion Coefficients in the Literature

6.5 Summary

Acknowledgments

References

7 Atom-Centered Potentials for Noncovalent Interactions and Other Applications

7.1 Introduction

7.2 A Brief Theoretical Background on Effective Core Potentials

7.3 Beyond Potentials Representing Core Electrons: ACPs for Application in QMMM Calculations

7.4 ACPs for Improving DFT in Noncovalently Interacting Systems

7.5 ACPs for Improved Descriptions of Covalent Bonds and Noncovalent Interactions

7.6 ACPs for Basis Set Incompleteness

7.7 Summary and Outlook

References

8 The vdW-DF Family of Nonlocal Exchange-Correlation Functionals

8.1 Why a Nonlocal Correlation Density Functional?

8.2 Exchange and Correlation in DFT

8.3 Learning from the Asymptotic Limit

8.4 Derivation of vdW-DF

8.4.1 The Coupling Constant Integration

8.4.2 The Universal-Kernel Evaluation

8.4.3 Further Developments: Self-Consistency and Spin

8.4.4 Related Approaches: Vydrov-Van Voorhis Functionals

8.5 Importance of Being Electron Focused

8.6 Overview of Nonlocal Functional Releases and Variants

8.6.1 vdW-DF1

8.6.2 vdW-DF2

8.6.3 Exchange Functionals

8.6.4 VV Family and Variants

8.7 Current Status and Future Developments

Acknowledgments

References

Part II Applications

9 Noncovalent Interactions in Organic Electronic Materials

9.1 Introduction

9.2 Materials Design Motifs

9.2.1 Charge-Carrier Transport in Organic Semiconductors: Dependence on the Intermolecular Electronic Coupling

9.2.2 Heteroatoms Within the p-Conjugated Backbone

9.2.3 Halogen Substituents on the p-Conjugated Backbone Periphery

9.2.4 The Role of Alkyl Chains: From Solubility to Steric Bulk

9.3 Noncovalent Interactions in Molecular Materials

9.3.1 The Oligoacene Series

9.3.2 Rubrene: Solid-State Structure Determined by a Balance of Intramolecular and Intermolecular Noncovalent Interactions

9.3.3 Azapentacenes and Benzodithiophene as Model Systems to Investigate the Impacts of Heteroatom Substitution

9.3.4 Noncovalent Interactions in Fullerenes and Polymer:Fullerene Blends: Implications for Processing and Solar Cells

9.4 Synopsis

Acknowledgments

References

10 Noncovalent Interactions in Molecular Crystals

10.1 Introduction

10.2 Techniques for Modeling Molecular Crystals

10.2.1 Periodic DFT

10.2.2 Periodic MP2

10.2.3 Fragment Methods

Incremental Methods

Hybrid Many-Body Interaction

Embedding Methods

Effective Electronic Structure Methods for Evaluating Fragment Contributions

10.3 Representative Applications

10.3.1 Finite-Temperature Effects

10.3.2 Molecular Crystal Phase Diagrams

Carbon Dioxide

Ice XV

10.3.3 Vibrational Spectroscopy

Fermi Resonance in Carbon Dioxide

Aspirin Polymorphism

10.3.4 NMR Spectroscopy

Gauge-Including Projector Augmented Wave Model

Fragment-Based Methods

10.4 Summary

Acknowledgments

References

11 Molecular Crystal Structure Prediction

11.1 Why Predict Organic Crystal Structures?

11.2 Background on Crystal Structure Prediction

11.2.1 General Algorithm

11.2.2 Discussion of the Common Assumptions Needed in CSP Algorithms

Thermodynamics Determines the Crystal Structures

a) Molecular Bonding and Conformational Analysis

b) Crystallographic Space Covered by Initial Generation of Crystal Structures

c) Hierarchical Refinement of Lattice Energies

d) Further Thermodynamic Refinement and Property Calculation

Comparison of Crystal Structures

11.2.3 Example of CSP in Practice

Conformational Analysis

Initial Generation

Refinement with Ψmol Approach

Property Calculation

11.3 Blind Test of Crystal Structure Prediction

11.3.1 Evolution of CSP Methods

11.3.2 State-of-the-Art CSP as a Test of Modeling Noncovalent Interactions

11.4 CSP as an Aid in Pharmaceutical Development

11.4.1 The Diversity of the Crystal Energy Landscape

11.4.2 Finding the Most Stable Polymorph

11.4.3 Characterizing Polymorph Structure, Disorder, and Polymorphic Purity

11.4.4 Suggesting Experiments to Find Predicted Polymorphs

11.5 Chiral Separation by Crystallization

11.6 Conclusions and Future Challenges

Acknowledgments

References

12 Noncovalent Interactions and Environment Effects

12.1 Introduction

12.2 The Effective Hamiltonian

12.3 Polarizable Embeddings

12.3.1 Continuum Embeddings: The Apparent Surface Charge Formulation

12.3.2 Atomistic Embeddings: The Induced Dipole Formulation

12.4 Beyond the SCF Energy

12.4.1 Ground State Properties of Embedded Systems

12.4.2 Electronic Transitions in Embedded Systems

12.5 Outlook

References

13 Surface Adsorption

13.1 Introduction

13.2 Dobson's Classification Scheme for Dispersion Energy Components and Their Application to Asymptotic Scaling Laws for Some Paradigmatic Situations

13.3 Contributions to the Dispersion Interaction Included in Modern Computational Methods

13.4 Benzene on Cu, Ag, and Au Surfaces

13.5 Strong van der Waals Forces: 1,10-Phenanthroline Monolayers on Au(111)

13.6 The Dispersive Nature of the Au-S Bond to Surfaces and Nanoparticles

13.7 Dispersion and Free Energy Calculations of SAM Formation and Polymorphism from Solution

13.8 Computational Efficiency

13.9 Conclusions

Symbols

Acknowledgments

References

14 Noncovalent Interactions in Nanotechnology

14.1 Introduction

14.2 Relevant Noncovalent Interactions

14.2.1 Hydrogen Bonding

14.2.2 Hydrophobic Interactions

14.2.3 p-p Interactions

14.2.4 Electrostatic Interactions

14.3 Growth

14.3.1 Top-Down Approaches

14.3.2 Bottom-Up Approaches

14.3.3 Alternative Approaches

14.4 Layered Materials

14.4.1 Graphene: A Prototype

14.4.2 Beyond Graphene

14.5 Noncovalent Interactions in Nanoporous Materials

14.5.1 Porosity

14.5.2 Adsorption in Nanopores

14.6 Noncovalent Interactions in Soft Matter

14.6.1 Challenges in Polymer Physics Underpinned by Noncovalent Interactions

14.7 Conclusion and Outlook

Acknowledgments

References

Subject Index

Back Cover

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