Benchmarking PSI-BLAST in Genome Annotation

By Müller A.   MacCallum R.M.   Sternberg M.J.E.  

Journal of Molecular Biology, Vol. 293, Iss. 5, 1999-11 ,pp. : 1257-1271

Academic Press

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PSI-BLAST pseudocounts and the minimum description length principle

By Altschul Stephen F.   Gertz E. Michael   Agarwala Richa   Schäffer Alejandro A.   Yu Yi-Kuo  

Nucleic Acids Research, Vol. 37, Iss. 3, 2009-02 ,pp. : 815-824

Oxford University Press

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

By Altschul Stephen F.   Madden Thomas L.   Schäffer Alejandro A.   Zhang Jinghui   Zhang Zheng   Miller Webb   Lipman David J.  

Nucleic Acids Research, Vol. 25, Iss. 17, 1997-01 ,pp. : 3389-3402

Oxford University Press

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Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

By Schäffer A.A.   Aravind L.   Madden T.L.   Shavirin S.   Spouge J.L.   Wolf Y.I.   Koonin E.V.   Altschul S.F.  

Nucleic Acids Research, Vol. 29, Iss. 14, 2001-07 ,pp. : 2994-3005

Oxford University Press

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PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of β-propellers in UV-damaged DNA-binding protein

By Neuwald A.F.   Poleksic A.  

Nucleic Acids Research, Vol. 28, Iss. 18, 2000-09 ,pp. : 3570-3580

Oxford University Press

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