Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites

By Kang Keunsoo  

Nucleic Acids Research, Vol. 37, Iss. 6, 2009-04 ,pp. : 2003-2013

Oxford University Press

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Genome-wide identification of in vivo protein–DNA binding sites from ChIP-Seq data

By Jothi Raja   Cuddapah Suresh   Barski Artem   Cui Kairong   Zhao Keji  

Nucleic Acids Research, Vol. 36, Iss. 16, 2008-09 ,pp. : 5221-5231

Oxford University Press

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Novel recognition motifs and biological functions of the RNA-binding protein HuD revealed by genome-wide identification of its targets

By Bolognani Federico  

Nucleic Acids Research, Vol. 38, Iss. 1, 2010-01 ,pp. : 117-130

Oxford University Press

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Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction

By Ortiz-Barahona Amaya  

Nucleic Acids Research, Vol. 38, Iss. 7, 2010-04 ,pp. : 2332-2345

Oxford University Press

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Using genome-wide measurements for computational prediction of SH2peptide interactions

By Wunderlich Zeba  

Nucleic Acids Research, Vol. 37, Iss. 14, 2009-08 ,pp. : 4629-4641

Oxford University Press

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