Incorporation, Relative Homoplasy, and Effect of Gap Characters in Sequence-Based Phylogenetic Analyses

By Simmons Mark P.   Ochoterena Helga   Carr Timothy G.  

Systematic Biology, Vol. 50, Iss. 3, 2001-05 ,pp. : 454-462

Oxford University Press

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Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

By Sullivan Jack   Swofford David L.  

Systematic Biology, Vol. 50, Iss. 5, 2001-09 ,pp. : 723-729

Oxford University Press

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Increasing the Efficiency of Searches for the Maximum Likelihood Tree in a Phylogenetic Analysis of up to 150 Nucleotide Sequences

By Morrison David  

Systematic Biology, Vol. 56, Iss. 6, 2007-12 ,pp. : 988-1010

Oxford University Press

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Homoplasy and Distribution of AFLP Fragments: An Analysis In Silico of the Genome of Different Species

By Caballero Armando   Quesada Humberto  

Molecular Biology and Evolution, Vol. 27, Iss. 5, 2010-05 ,pp. : 1139-1151

Oxford University Press

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A Fast Method for Approximating Maximum Likelihoods of Phylogenetic Trees from Nucleotide Sequences

By Rogers James S.   Swofford David L.  

Systematic Biology, Vol. 47, Iss. 1, 1998-03 ,pp. : 77-89

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