Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

By Schäffer A.A.   Aravind L.   Madden T.L.   Shavirin S.   Spouge J.L.   Wolf Y.I.   Koonin E.V.   Altschul S.F.  

Nucleic Acids Research, Vol. 29, Iss. 14, 2001-07 ,pp. : 2994-3005

Oxford University Press

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

By Altschul Stephen F.   Madden Thomas L.   Schäffer Alejandro A.   Zhang Jinghui   Zhang Zheng   Miller Webb   Lipman David J.  

Nucleic Acids Research, Vol. 25, Iss. 17, 1997-01 ,pp. : 3389-3402

Oxford University Press

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PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of β-propellers in UV-damaged DNA-binding protein

By Neuwald A.F.   Poleksic A.  

Nucleic Acids Research, Vol. 28, Iss. 18, 2000-09 ,pp. : 3570-3580

Oxford University Press

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Getting the most from PSI-BLAST

By Jones D.T.   Swindells M.B.  

Trends in Biochemical Sciences, Vol. 27, Iss. 3, 2002-03 ,pp. : 161-164

Elsevier

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Benchmarking PSI-BLAST in Genome Annotation

By Müller A.   MacCallum R.M.   Sternberg M.J.E.  

Journal of Molecular Biology, Vol. 293, Iss. 5, 1999-11 ,pp. : 1257-1271

Academic Press

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